PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076515001
Common NameGSBRNA2T00076515001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 260aa    MW: 27120.3 Da    PI: 8.0793
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076515001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.4e-40341341100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq ++ fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +
  GSBRNA2T00076515001  34 PCGACKFLRRKCVPGCIFAPYFDSEQgSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVN 123
                          7***********************998899************************************************************ PP

               DUF260  90 lkaelallkee 100
                          l+ae+++++++
  GSBRNA2T00076515001 124 LQAEVSYVQAH 134
                          *******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.93233135IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3934132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSGGGNTITP MGGGGCGGRS SGSGGTSGGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG  60
SAYFAAVHKV FGASNVSKLL LHIPVHRRSD AVVTICYEAQ ARIRDPIYGC VAHIFALQQQ  120
VVNLQAEVSY VQAHLASLEL PDPQTRPPPP PQSQPQSLFF TPPPLSTTDL AASVSPLPST  180
YDLASTFDHA ASPSSWATQQ RRFVDPRHQY GRSLSSSSAT VGLAGGNSDL EALAHELLHR  240
QGSPPPTTTD DSPSRTMSR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.143941e-137seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142334.10.0PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-119LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A078JQA10.0A0A078JQA1_BRANA; BnaAnng27870D protein
STRINGBra040311.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-107LOB domain-containing protein 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]